STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_0447PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: bpt:Bpet4787 TonB-dependent outer membrane receptor. (757 aa)    
Predicted Functional Partners:
Hbal_2597
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0377 TonB-dependent receptor.
  
    0.628
Hbal_2603
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1136 TonB-dependent receptor.
  
    0.627
Hbal_2619
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: amc:MADE_02746 putative regulatory protein.
 
  
 0.626
Hbal_2735
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pat:Patl_0155 TonB-dependent receptor.
  
   
 0.598
Hbal_1522
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0504 TonB-dependent receptor.
  
    0.592
Hbal_1528
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0484 TonB-dependent receptor.
  
    0.581
Hbal_1596
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c2096 TonB-dependent receptor.
  
   
 0.581
Hbal_2618
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; sigma-70 region 4 domain protein; KEGG: pat:Patl_0937 ECF subfamily RNA polymerase sigma-24 factor.
  
    0.581
Hbal_2775
KEGG: cps:CPS_0639 hypothetical protein.
  
     0.540
Hbal_2572
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_0917 TonB-dependent siderophore receptor.
  
  
 0.537
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.