STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_0673Response regulator receiver protein; KEGG: vpa:VP1081 hypothetical protein. (267 aa)    
Predicted Functional Partners:
Hbal_0674
KEGG: vpa:VP1082 hypothetical protein.
       0.814
Hbal_0675
PFAM: UvrD/REP helicase; protein of unknown function DUF955; KEGG: vpa:VP1083 putative ATP-dependent DNA helicase; Belongs to the helicase family. UvrD subfamily.
       0.790
Hbal_0676
KEGG: spq:SPAB_01123 hypothetical protein.
       0.553
Hbal_0677
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: spq:SPAB_01124 hypothetical protein.
       0.550
Hbal_0678
KEGG: spq:SPAB_01125 hypothetical protein.
       0.550
Hbal_0817
KEGG: hch:HCH_06792 hypothetical protein.
  
 
 0.528
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.526
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.474
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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