Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Hbal_0701 | Hbal_0702 | KEGG: cak:Caul_2315 hypothetical protein. | KEGG: cak:Caul_2314 protein of unknown function, Spy-related. | 0.773 |
Hbal_0701 | Hbal_0703 | KEGG: cak:Caul_2315 hypothetical protein. | RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c1475 RNA polymerase sigma-70 factor,ECF subfamily. | 0.757 |
Hbal_0702 | Hbal_0701 | KEGG: cak:Caul_2314 protein of unknown function, Spy-related. | KEGG: cak:Caul_2315 hypothetical protein. | 0.773 |
Hbal_0702 | Hbal_0703 | KEGG: cak:Caul_2314 protein of unknown function, Spy-related. | RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c1475 RNA polymerase sigma-70 factor,ECF subfamily. | 0.766 |
Hbal_0703 | Hbal_0701 | RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c1475 RNA polymerase sigma-70 factor,ECF subfamily. | KEGG: cak:Caul_2315 hypothetical protein. | 0.757 |
Hbal_0703 | Hbal_0702 | RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pzu:PHZ_c1475 RNA polymerase sigma-70 factor,ECF subfamily. | KEGG: cak:Caul_2314 protein of unknown function, Spy-related. | 0.766 |