STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_0852PFAM: Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: pla:Plav_0239 TPR repeat-containing protein. (273 aa)    
Predicted Functional Partners:
Hbal_0848
KEGG: cak:Caul_4191 pilus assembly protein CpaE.
 
  
 0.833
Hbal_0844
PFAM: peptidase A24A prepilin type IV; KEGG: rec:RHECIAT_CH0000248 prepilin peptidase protein.
 
   
 0.829
Hbal_0851
PFAM: type II secretion system protein; KEGG: cak:Caul_4188 type II secretion system protein.
 
  
 0.823
Hbal_0845
TIGRFAM: Flp pilus assembly protein CpaB; PFAM: SAF domain protein; KEGG: bja:bll0667 CtpC protein.
 
  
 0.818
Hbal_0846
PFAM: type II and III secretion system protein; transport-associated; KEGG: pla:Plav_0233 type II and III secretion system protein; Belongs to the bacterial secretin family.
 
  
 0.817
Hbal_0841
PFAM: TadE family protein; KEGG: nwi:Nwi_0306 Flp pilus assembly protein TadG.
 
  
 0.815
Hbal_0840
PFAM: TadE family protein; KEGG: pla:Plav_0225 TadE family protein.
 
  
 0.798
Hbal_0850
PFAM: type II secretion system protein; KEGG: pla:Plav_0237 type II secretion system protein.
 
  
 0.798
Hbal_0847
Type IV pili component-like protein; KEGG: pla:Plav_0234 pilus biogenesis lipoprotein CpaD.
 
     0.797
Hbal_0842
KEGG: oan:Oant_0719 hypothetical protein.
 
  
 0.793
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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