STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_0994PFAM: RNA-binding S4 domain protein; pseudouridine synthase; SMART: RNA-binding S4 domain protein; KEGG: ret:RHE_CH00835 pseudouridylate synthase, subunit B protein; Belongs to the pseudouridine synthase RsuA family. (508 aa)    
Predicted Functional Partners:
der
Small GTP-binding protein; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
 
  
 0.830
cmk
TIGRFAM: cytidylate kinase; PFAM: cytidylate kinase region; KEGG: msl:Msil_0614 cytidylate kinase.
 
  
 0.620
Hbal_0991
TIGRFAM: methyltransferase; PFAM: Protein of unknown function methylase putative; KEGG: cak:Caul_4642 methyltransferase.
      0.586
Hbal_1396
Chromosome segregation and condensation protein, ScpB; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves.
  
  
 0.575
Hbal_0015
TIGRFAM: exodeoxyribonuclease III Xth; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: ccs:CCNA_03821 exodeoxyribonuclease III.
  
    0.556
Hbal_1335
TIGRFAM: exodeoxyribonuclease III Xth; exodeoxyribonuclease III; PFAM: Endonuclease/exonuclease/phosphatase; KEGG: pla:Plav_3018 exodeoxyribonuclease III Xth.
  
    0.556
Hbal_0993
PFAM: protein of unknown function DUF81; KEGG: pzu:PHZ_c3170 hypothetical protein.
       0.527
Hbal_2052
KEGG: pla:Plav_2767 RluA family pseudouridine synthase; TIGRFAM: pseudouridine synthase, RluA family; PFAM: pseudouridine synthase; RNA-binding S4 domain protein; SMART: RNA-binding S4 domain protein; Belongs to the pseudouridine synthase RluA family.
 
 
 
 0.486
Hbal_1608
PFAM: pseudouridine synthase; KEGG: amc:MADE_02367 ribosomal large subunit pseudouridine synthase E; Belongs to the pseudouridine synthase RsuA family.
 
 
  
0.423
Hbal_2384
Pseudouridine synthase, RluA family; Responsible for synthesis of pseudouridine from uracil. Belongs to the pseudouridine synthase RluA family.
 
 
 
 0.414
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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