STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_1098Putative RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: Sigma-70 region 4 type 2; sigma-70 region 2 domain protein; KEGG: bbt:BBta_6184 putative RNA polymerase sigma factor. (418 aa)    
Predicted Functional Partners:
Hbal_1097
PFAM: YCII-related; KEGG: swd:Swoo_0824 DGPFAETKE family protein.
 
     0.933
Hbal_0181
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: ara:Arad_3303 hypothetical protein.
      0.601
Hbal_1099
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: vpa:VP1798 hypothetical protein.
       0.545
Hbal_1261
PFAM: Activator of Hsp90 ATPase 1 family protein; KEGG: pla:Plav_2390 activator of HSP90 ATPase 1 family protein.
 
     0.476
Hbal_1096
PFAM: Lysine exporter protein (LYSE/YGGA); KEGG: psb:Psyr_0092 lysine exporter protein LysE/YggA.
       0.427
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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