STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_1322PFAM: protein of unknown function DUF1365; KEGG: sit:TM1040_0413 hypothetical protein. (261 aa)    
Predicted Functional Partners:
Hbal_1321
PFAM: Cyclopropane-fatty-acyl-phospholipid synthase; Methyltransferase type 11; Methyltransferase type 12; KEGG: sit:TM1040_0412 cyclopropane-fatty-acyl-phospholipid synthase.
  
 0.989
Hbal_1319
KEGG: sit:TM1040_0409 hypothetical protein.
 
  
 0.973
Hbal_1323
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: sit:TM1040_0414 FAD dependent oxidoreductase.
  
 0.973
Hbal_1318
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sit:TM1040_0408 short-chain dehydrogenase/reductase SDR.
 
  
 0.949
Hbal_1325
TIGRFAM: anti-sigma factor, ChrR family; KEGG: rsp:RSP_1093 anti-sigma factor ChrR.
 
  
 0.926
Hbal_1320
KEGG: ppw:PputW619_3178 hypothetical protein.
 
     0.898
Hbal_1324
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: avi:Avi_0089 RNA polymerase sigma subunit protein; Belongs to the sigma-70 factor family. ECF subfamily.
 
   
 0.871
Hbal_0037
Deoxyribodipyrimidine photo-lyase; PFAM: DNA photolyase FAD-binding; DNA photolyase domain protein; KEGG: ccs:CCNA_01495 deoxyribodipyrimidine photolyase.
 
     0.568
Hbal_3080
TIGRFAM: sugar (Glycoside-Pentoside-Hexuronide) transporter; KEGG: pap:PSPA7_2622 sugar transporter, glycoside-pentoside-hexuronide.
  
  
 0.483
Hbal_2387
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: ftw:FTW_1341 hypothetical protein.
 
     0.435
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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