STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_1522PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0504 TonB-dependent receptor. (753 aa)    
Predicted Functional Partners:
Hbal_1482
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: sme:SMc04204 putative iron transport regulator transmembrane protein.
 
 
 0.803
Hbal_2619
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: amc:MADE_02746 putative regulatory protein.
 
 
 0.763
Hbal_2764
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor.
  
    0.752
Hbal_2709
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: pfl:PFL_3610 RNA polymerase sigma-70 family protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
    0.716
Hbal_1624
PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: ccs:CCNA_00214 TonB-dependent receptor.
  
    0.709
Hbal_2530
TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: psa:PST_0996 TonB-dependent siderophore receptor.
 
    0.695
Hbal_2707
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_3801 TonB-dependent receptor.
  
    0.676
Hbal_3034
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_02910 TonB-dependent receptor.
  
   
 0.674
Hbal_0890
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: ccs:CCNA_01155 TonB-dependent outer membrane receptor.
  
   
 0.671
Hbal_2706
PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: smt:Smal_3801 TonB-dependent receptor.
  
   
 0.662
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.