STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_1663Signal transduction histidine kinase, nitrogen specific, NtrB; PFAM: ATP-binding region ATPase domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; PAS domain containing protein; KEGG: pzu:PHZ_c1731 nitrogen regulation protein NR(II). (357 aa)    
Predicted Functional Partners:
Hbal_1662
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; KEGG: cak:Caul_2606 nitrogen metabolism transcriptional regulator, NtrC, fis family.
 0.998
Hbal_1805
PFAM: nitrogen regulatory protein P-II; KEGG: cak:Caul_2852 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 0.973
Hbal_1664
Dihydrouridine synthase DuS; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.918
Hbal_1660
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; SMART: response regulator receiver; AAA ATPase; KEGG: cak:Caul_2608 two component, sigma54 specific, fis family transcriptional regulator.
 
 0.915
Hbal_2634
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: ompR-like transcriptional regulator.
 
 
 0.822
Hbal_2986
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: btr:Btr_1335 response regulator.
 
 
 0.795
Hbal_0018
TIGRFAM: ammonium transporter; PFAM: Rh family protein/ammonium transporter; KEGG: pla:Plav_1303 ammonium transporter.
  
 
 0.776
Hbal_2951
Two component, sigma54 specific, transcriptional regulator, Fis family; PFAM: sigma-54 factor interaction domain-containing protein; helix-turn-helix Fis-type; response regulator receiver; ATPase associated with various cellular activities AAA_5; SMART: response regulator receiver; AAA ATPase; KEGG: pzu:PHZ_c3115 sigma-54-dependent transcriptional regulator (activator) protein.
 
 0.769
Hbal_2354
PFAM: nitrogen regulatory protein P-II; KEGG: cak:Caul_0380 nitrogen regulatory protein P-II; Belongs to the P(II) protein family.
  
 
 0.745
Hbal_0338
PAS/PAC sensor signal transduction histidine kinase; PFAM: ATP-binding region ATPase domain protein; PAS fold-4 domain protein; PAS fold domain protein; histidine kinase A domain protein; SMART: ATP-binding region ATPase domain protein; histidine kinase A domain protein; KEGG: cak:Caul_4551 histidine kinase.
  
 
 
 0.741
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.