STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_2009KEGG: sde:Sde_2315 hypothetical protein. (388 aa)    
Predicted Functional Partners:
Hbal_0970
PFAM: glycoside hydrolase family 35; KEGG: ccs:CCNA_02891 beta-galactosidase.
 
 0.915
Hbal_2827
TIGRFAM: pectate lyase; KEGG: xcb:XC_0126 pectate lyase E.
  
     0.756
Hbal_2622
PFAM: Pectinesterase; KEGG: sde:Sde_0944 ribosomal protein L30.
  
     0.725
Hbal_2617
TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: pzu:PHZ_c2460 TonB-dependent receptor.
  
     0.658
Hbal_2773
TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: sde:Sde_2991 hypothetical protein.
  
     0.653
Hbal_0625
SMART: DEAD-like helicase; KEGG: pap:PSPA7_5332 Sea12.
   
    0.635
Hbal_1634
PFAM: type III restriction protein res subunit; KEGG: gur:Gura_4389 type III restriction enzyme, res subunit.
   
    0.635
Hbal_2621
KEGG: sde:Sde_3157 esterase/lipase-like.
  
     0.555
Hbal_2620
TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor plug; TonB-dependent receptor; KEGG: xca:xccb100_0128 TonB-dependent outer membrane receptor.
  
     0.547
Hbal_1902
acetyl-CoA carboxylase, biotin carboxylase; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA.
   
    0.541
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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