STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_2034RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: ccs:CCNA_03589 RNA polymerase ECF-type sigma factor SigT. (204 aa)    
Predicted Functional Partners:
Hbal_2035
PFAM: histidine kinase dimerisation/phosphoacceptor; ATP-binding region ATPase domain protein; SMART: ATP-binding region ATPase domain protein; KEGG: ccs:CCNA_03588 two-component sensor histidine kinase.
 
   
 0.921
Hbal_2032
PFAM: response regulator receiver; SMART: response regulator receiver; KEGG: pzu:PHZ_c0303 response regulator.
 
  
 0.894
Hbal_2033
KEGG: pzu:PHZ_c0302 hypothetical protein.
       0.773
Hbal_1324
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; sigma-70 region 4 domain protein; KEGG: avi:Avi_0089 RNA polymerase sigma subunit protein; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.684
Hbal_0817
KEGG: hch:HCH_06792 hypothetical protein.
  
 
 0.528
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.526
Hbal_2031
PFAM: Exopolysaccharide synthesis ExoD; KEGG: pzu:PHZ_c1367 probable exopolysaccharide synthesis protein.
 
     0.518
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.474
Hbal_1325
TIGRFAM: anti-sigma factor, ChrR family; KEGG: rsp:RSP_1093 anti-sigma factor ChrR.
   
 
 0.431
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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