STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_2502TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: xac:XAC0144 TonB-dependent receptor. (921 aa)    
Predicted Functional Partners:
Hbal_2797
SMART: transcription factor jumonji jmjC domain protein; KEGG: cak:Caul_1852 transcription factor jumonji domain-containing protein.
 
     0.758
Hbal_2798
PFAM: SapC family protein; KEGG: pzu:PHZ_c2924 hypothetical protein.
  
     0.749
Hbal_2796
PFAM: tryptophan halogenase; FAD dependent oxidoreductase; KEGG: cak:Caul_1853 tryptophan halogenase.
 
     0.733
Hbal_2461
PFAM: tryptophan halogenase; KEGG: ccs:CCNA_02371 tryptophan halogenase superfamily protein.
 
     0.720
Hbal_2451
PFAM: tryptophan halogenase; KEGG: cja:CJA_2881 tryptophan halogenase.
 
     0.712
Hbal_2452
PFAM: tryptophan halogenase; FAD dependent oxidoreductase; KEGG: cak:Caul_1840 tryptophan halogenase.
 
     0.711
Hbal_2462
PFAM: tryptophan halogenase; KEGG: lch:Lcho_3228 tryptophan halogenase.
 
     0.700
Hbal_2454
PFAM: tryptophan halogenase; KEGG: cak:Caul_1842 tryptophan halogenase.
 
     0.688
Hbal_1450
KEGG: cps:CPS_3994 putative lipoprotein.
 
     0.631
Hbal_2993
KEGG: cak:Caul_1216 hypothetical protein.
  
     0.628
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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