STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_2762Polygalacturonase; KEGG: ccs:CCNA_00608 polygalacturonase. (530 aa)    
Predicted Functional Partners:
Hbal_2622
PFAM: Pectinesterase; KEGG: sde:Sde_0944 ribosomal protein L30.
 
  
 0.866
Hbal_2761
PFAM: RhaT l-rhamnose-proton symport 2; KEGG: avn:Avin_09150 RhaT L-rhamnose-proton symport 2.
 
     0.864
Hbal_2827
TIGRFAM: pectate lyase; KEGG: xcb:XC_0126 pectate lyase E.
 
   
 0.682
Hbal_2760
PFAM: FMN-dependent alpha-hydroxy acid dehydrogenase; KEGG: cak:Caul_3608 L-lactate dehydrogenase.
       0.634
Hbal_1249
TIGRFAM: phage portal protein, HK97 family; PFAM: portal protein; KEGG: cak:Caul_3916 HK97 family phage portal protein.
  
   0.624
Hbal_2759
PFAM: amidohydrolase 2; KEGG: bbt:BBta_3275 hypothetical protein.
 
     0.620
Hbal_0573
PFAM: alpha-L-arabinofuranosidase domain protein; KEGG: cja:CJA_2769 alpha-L-arabinofuranosidase, abf51A.
  
   
 0.617
Hbal_2793
PFAM: protein of unknown function DUF303 acetylesterase putative; glycoside hydrolase family 2 sugar binding; KEGG: xcv:XCV4334 putative secreted protein.
 
 
   0.589
Hbal_0970
PFAM: glycoside hydrolase family 35; KEGG: ccs:CCNA_02891 beta-galactosidase.
  
     0.562
Hbal_2752
KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
    0.555
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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