STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hbal_2818KEGG: eca:ECA4070 pectate lyase. (461 aa)    
Predicted Functional Partners:
Hbal_2622
PFAM: Pectinesterase; KEGG: sde:Sde_0944 ribosomal protein L30.
   
 0.874
Hbal_2804
PFAM: glycoside hydrolase family 43; KEGG: xcv:XCV0150 xylosidase precursor; Belongs to the glycosyl hydrolase 43 family.
 
   
 0.755
Hbal_2819
KEGG: xac:XAC0161 2-keto-4-pentenoate hydratase.
 
     0.737
Hbal_2621
KEGG: sde:Sde_3157 esterase/lipase-like.
     0.722
Hbal_2806
KEGG: cak:Caul_3552 hypothetical protein.
 
     0.722
Hbal_2807
PFAM: Cupin 2 conserved barrel domain protein; KEGG: pzu:PHZ_c2455 cupin 2, conserved barrel.
      0.705
Hbal_2805
TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_0288 TonB-dependent receptor.
 
     0.665
Hbal_2817
Transcriptional regulator, LacI family; PFAM: regulatory protein LacI; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein LacI; KEGG: ccs:CCNA_01556 transcriptional regulator, LacI family.
 
     0.572
Hbal_1973
PFAM: glycoside hydrolase family 5; KEGG: cak:Caul_1283 glycoside hydrolase family protein; Belongs to the glycosyl hydrolase 5 (cellulase A) family.
 
  
 0.571
Hbal_2455
TIGRFAM: TonB-dependent receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; KEGG: cak:Caul_1843 TonB-dependent receptor.
  
     0.553
Your Current Organism:
Hirschia baltica
NCBI taxonomy Id: 582402
Other names: H. baltica ATCC 49814, Hirschia baltica ATCC 49814, Hirschia baltica DSM 5838, Hirschia baltica str. ATCC 49814, Hirschia baltica strain ATCC 49814
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