STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KMY31282.12,4-diaminobutyrate decarboxylase; Derived by automated computational analysis using gene prediction method: Protein Homology. (549 aa)    
Predicted Functional Partners:
KMY31615.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.939
KMY30126.1
Chorismate mutase; Catalyzes the formation of 3-deoxy-D-aribino-hept-2-ulosonate 7-phosphate from phosphoenolpyruvate and D-erythrose 4-phosphate and the formation of prephenate from chorismate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.815
KMY31281.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.801
KMY29764.1
FAD-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.734
KMY31919.1
4-aminobutyrate aminotransferase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
 0.730
glsA
Glutaminase; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the glutaminase family.
  
 
 0.724
aspA
Aspartate ammonia-lyase; Catalyzes the formation of fumarate from aspartate; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.721
asnB
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.699
asnB-2
Asparagine synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.699
panC
Pantoate--beta-alanine ligase; Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate. Belongs to the pantothenate synthetase family.
  
 
 0.694
Your Current Organism:
Lysinibacillus xylanilyticus
NCBI taxonomy Id: 582475
Other names: CCUG 57438, DSM 23493, KCTC 13423, L. xylanilyticus, Lysinibacillus sp. JKR42, Lysinibacillus sp. XDB9, Lysinibacillus xylanilyticus Lee et al. 2010, Microbacterium sp. CHR3P2B2-M, strain XDB9
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