STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERN43141.1Hypothetical protein; COG: Chromosome segregation ATPases. (341 aa)    
Predicted Functional Partners:
ERN41153.1
Hypothetical protein.
  
     0.739
ERN42823.1
Hypothetical protein.
  
     0.724
ERN42706.1
Hypothetical protein.
  
     0.707
ERN39927.1
Hypothetical protein.
  
     0.685
ERN42361.1
Hypothetical protein.
 
     0.680
ERN43023.1
Hypothetical protein.
  
     0.672
ERN42604.1
COG: Predicted Zn-dependent protease; PFAM: Peptidase_M10 - Matrixin.
  
     0.666
ERN40878.1
COG: Organic solvent tolerance protein OstA; PFAM: LptC - Lipopolysaccharide-assembly, LptC-related.
  
     0.657
ERN40797.1
COG: Subtilisin-like serine proteases; PFAM: Peptidase_S8 - Subtilase family.
  
     0.649
ERN42254.1
Hypothetical protein; Partial gene; COG: ABC-type Na+ efflux pump, permease component; PFAM: ABC2_membrane_2 - ABC-2 family transporter protein.
 
     0.640
Your Current Organism:
Rubidibacter lacunae
NCBI taxonomy Id: 582515
Other names: R. lacunae KORDI 51-2, Rubidibacter lacunae KCTC 40015, Rubidibacter lacunae KORDI 51-2, Rubidibacter lacunae UTEX L2944
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.