STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERN42759.1Hypothetical protein. (571 aa)    
Predicted Functional Partners:
ERN42464.1
COG: Predicted extracellular nuclease; PFAM: 5_nucleotid_C - 5'-nucleotidase, C-terminal domain; Exo_endo_phos - Endonuclease/Exonuclease/phosphatase family; CHRD - CHRD domain; Phytase-like - Esterase-like activity of phytase.
   
 0.987
ERN40568.1
COG: Cellobiohydrolase A (1,4-beta-cellobiosidase A); PFAM: CBM_2 - Cellulose binding domain; Calx-beta - Calx-beta domain.
    
 0.950
ERN42758.1
COG: Glycosyltransferase; PFAM: Glycos_transf_1 - Glycosyl transferases group 1.
 
  
  0.880
ERN42757.1
COG: Glycosyltransferase; PFAM: Glycos_transf_1 - Glycosyl transferases group 1.
 
  
  0.859
ERN42131.1
COG: Membrane protein involved in the export of O-antigen and teichoic acid; PFAM: Polysacc_synt - Polysaccharide biosynthesis protein.
  
   
 0.772
ERN43059.1
COG: Predicted glycosyltransferases; PFAM: Glycos_transf_2 - Glycosyl transferase family 2.
  
     0.770
ERN42130.1
Hypothetical protein; PFAM: O-antigen_lig - O-antigen ligase like membrane protein.
  
     0.767
ERN42679.1
COG: Glycosyltransferase; PFAM: Glycos_transf_1 - Glycosyl transferases group 1.
  
  
  0.766
ERN42560.1
COG: Predicted glycosyltransferases; PFAM: Glycos_transf_2 - Glycosyl transferase family 2.
  
     0.680
ERN41453.1
COG: Highly conserved protein containing a thioredoxin domain; PFAM: DUF255 - Protein of unknown function, DUF255.
    
   0.596
Your Current Organism:
Rubidibacter lacunae
NCBI taxonomy Id: 582515
Other names: R. lacunae KORDI 51-2, Rubidibacter lacunae KCTC 40015, Rubidibacter lacunae KORDI 51-2, Rubidibacter lacunae UTEX L2944
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.