STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERN42668.1PFAM: DUF565 - Protein of unknown function (DUF565). (115 aa)    
Predicted Functional Partners:
ERN42669.1
COG: Predicted kinase.
       0.793
ERN40318.1
COG: Uncharacterized protein conserved in bacteria.
  
     0.766
ERN41535.1
Hypothetical protein.
  
     0.764
ERN43159.1
PFAM: DUF3146 - Protein of unknown function (DUF3146).
  
     0.751
ERN42778.1
COG: Beta-propeller domains of methanol dehydrogenase type; PFAM: Repair_PSII - Repair protein.
  
     0.722
ERN40214.1
COG: Predicted membrane protein; PFAM: DUF2232 - Predicted membrane protein (DUF2232).
  
     0.710
ERN43002.1
Hypothetical protein; PFAM: TPR_16 - Tetratricopeptide repeat.
  
     0.702
ERN42007.1
Hypothetical protein.
  
     0.699
ERN41171.1
PFAM: PRC - PRC-barrel domain.
  
     0.696
ndhN
NADH-quinone oxidoreductase cyanobacterial subunit N; NDH-1 shuttles electrons from an unknown electron donor, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory and/or the photosynthetic chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation, and thus conserves the redox energy in a proton gradient. Cyanobacterial NDH-1 also plays a role in inorganic carbon-concentration.
  
     0.692
Your Current Organism:
Rubidibacter lacunae
NCBI taxonomy Id: 582515
Other names: R. lacunae KORDI 51-2, Rubidibacter lacunae KCTC 40015, Rubidibacter lacunae KORDI 51-2, Rubidibacter lacunae UTEX L2944
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.