STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERN40890.1COG: Alpha-amylase/alpha-mannosidase; PFAM: Glyco_hydro_57 - Glycosyl hydrolase family 57; DUF3536 - Domain of unknown function (DUF3536). (857 aa)    
Predicted Functional Partners:
ERN40312.1
COG: Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis/translation initiation factor 2B, gamma/epsilon subunits (eIF-2Bgamma/eIF-2Bepsilon); PFAM: Hexapep - Bacterial transferase hexapeptide (six repeats); NTP_transferase - Nucleotidyl transferase; PGM_PMM_I - Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I; PGM_PMM_II - Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; PGM_PMM_III - Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III.
    
  0.686
ERN40891.1
Hypothetical protein.
       0.456
ERN42727.1
Hypothetical protein.
  
     0.430
ERN41133.1
Hypothetical protein.
  
     0.429
ERN41162.1
COG: Predicted sensor protein/domain; PFAM: DICT - Sensory domain found in DIguanylate Cyclases & Two-component systems; HD_5 - HD domain.
  
   
 0.422
ERN42553.1
COG: 4-alpha-glucanotransferase; PFAM: Glyco_hydro_77 - 4-alpha-glucanotransferase; TIGRFAM: 4-alpha-glucanotransferase.
 
  
  0.408
Your Current Organism:
Rubidibacter lacunae
NCBI taxonomy Id: 582515
Other names: R. lacunae KORDI 51-2, Rubidibacter lacunae KCTC 40015, Rubidibacter lacunae KORDI 51-2, Rubidibacter lacunae UTEX L2944
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.