STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ERN40331.1Hypothetical protein; COG: Predicted transmembrane transcriptional regulator (anti-sigma factor). (156 aa)    
Predicted Functional Partners:
ERN40330.1
COG: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PFAM: Sigma70_r2 - Sigma-70 region 2; Sigma70_r4_2 - Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.881
ERN40186.1
Hypothetical protein.
 
 
 0.773
ERN42025.1
COG: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PFAM: Sigma70_r2 - Sigma-70 region 2; Sigma70_r4_2 - Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.770
ERN40512.1
COG: DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog; PFAM: Sigma70_r2 - Sigma-70 region 2; Sigma70_r4_2 - Sigma-70, region 4; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; Belongs to the sigma-70 factor family. ECF subfamily.
  
 
 0.770
ERN40332.1
Putative thioesterase; Catalyzes the hydrolysis of 1,4-dihydroxy-2-naphthoyl-CoA (DHNA-CoA) to 1,4-dihydroxy-2-naphthoate (DHNA), a reaction involved in phylloquinone (vitamin K1) biosynthesis; Belongs to the 4-hydroxybenzoyl-CoA thioesterase family. DHNA-CoA hydrolase subfamily.
       0.752
ERN39784.1
Hypothetical protein.
  
     0.719
ERN40189.1
COG: N-acetylmuramoyl-L-alanine amidase; PFAM: Amidase_3 - N-acetylmuramoyl-L-alanine amidase; SH3_3 - Bacterial SH3 domain.
  
     0.693
ERN42630.1
Hypothetical protein.
  
     0.687
ERN40425.1
Hypothetical protein.
  
     0.683
ERN42869.1
Hypothetical protein.
  
     0.680
Your Current Organism:
Rubidibacter lacunae
NCBI taxonomy Id: 582515
Other names: R. lacunae KORDI 51-2, Rubidibacter lacunae KCTC 40015, Rubidibacter lacunae KORDI 51-2, Rubidibacter lacunae UTEX L2944
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.