Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SFL26900.1 | SFL26931.1 | SAMN05192568_1002298 | SAMN05192568_1002300 | Putative photosynthetic complex assembly protein 2. | Hypothetical protein. | 0.954 |
SFL26900.1 | SFL26944.1 | SAMN05192568_1002298 | SAMN05192568_1002301 | Putative photosynthetic complex assembly protein 2. | Putative photosynthetic complex assembly protein. | 0.968 |
SFL26900.1 | SFL26976.1 | SAMN05192568_1002298 | SAMN05192568_1002302 | Putative photosynthetic complex assembly protein 2. | PH domain-containing protein. | 0.968 |
SFL26900.1 | SFL26988.1 | SAMN05192568_1002298 | SAMN05192568_1002303 | Putative photosynthetic complex assembly protein 2. | Photosynthetic reaction center H subunit. | 0.960 |
SFL26900.1 | SFL27006.1 | SAMN05192568_1002298 | SAMN05192568_1002304 | Putative photosynthetic complex assembly protein 2. | MFS transporter, BCD family, chlorophyll transporter. | 0.944 |
SFL26900.1 | SFL27022.1 | SAMN05192568_1002298 | SAMN05192568_1002305 | Putative photosynthetic complex assembly protein 2. | Mg-protoporphyrin IX methyltransferase. | 0.957 |
SFL26900.1 | SFL27048.1 | SAMN05192568_1002298 | SAMN05192568_1002307 | Putative photosynthetic complex assembly protein 2. | Cobaltochelatase CobN subunit. | 0.960 |
SFL26900.1 | SFL27093.1 | SAMN05192568_1002298 | SAMN05192568_1002310 | Putative photosynthetic complex assembly protein 2. | 3-vinyl bacteriochlorophyllide hydratase. | 0.946 |
SFL26900.1 | acsF | SAMN05192568_1002298 | SAMN05192568_1002299 | Putative photosynthetic complex assembly protein 2. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.951 |
SFL26900.1 | bchL | SAMN05192568_1002298 | SAMN05192568_1002306 | Putative photosynthetic complex assembly protein 2. | Ferredoxin protochlorophyllide reductase subunit L; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.939 |
SFL26931.1 | SFL26900.1 | SAMN05192568_1002300 | SAMN05192568_1002298 | Hypothetical protein. | Putative photosynthetic complex assembly protein 2. | 0.954 |
SFL26931.1 | SFL26944.1 | SAMN05192568_1002300 | SAMN05192568_1002301 | Hypothetical protein. | Putative photosynthetic complex assembly protein. | 0.962 |
SFL26931.1 | SFL26976.1 | SAMN05192568_1002300 | SAMN05192568_1002302 | Hypothetical protein. | PH domain-containing protein. | 0.970 |
SFL26931.1 | SFL26988.1 | SAMN05192568_1002300 | SAMN05192568_1002303 | Hypothetical protein. | Photosynthetic reaction center H subunit. | 0.965 |
SFL26931.1 | SFL27006.1 | SAMN05192568_1002300 | SAMN05192568_1002304 | Hypothetical protein. | MFS transporter, BCD family, chlorophyll transporter. | 0.943 |
SFL26931.1 | SFL27022.1 | SAMN05192568_1002300 | SAMN05192568_1002305 | Hypothetical protein. | Mg-protoporphyrin IX methyltransferase. | 0.946 |
SFL26931.1 | SFL27048.1 | SAMN05192568_1002300 | SAMN05192568_1002307 | Hypothetical protein. | Cobaltochelatase CobN subunit. | 0.927 |
SFL26931.1 | SFL27093.1 | SAMN05192568_1002300 | SAMN05192568_1002310 | Hypothetical protein. | 3-vinyl bacteriochlorophyllide hydratase. | 0.965 |
SFL26931.1 | acsF | SAMN05192568_1002300 | SAMN05192568_1002299 | Hypothetical protein. | Mg-protoporphyrin IX monomethyl ester (oxidative) cyclase; Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME); Belongs to the AcsF family. | 0.983 |
SFL26931.1 | bchL | SAMN05192568_1002300 | SAMN05192568_1002306 | Hypothetical protein. | Ferredoxin protochlorophyllide reductase subunit L; Component of the dark-operative protochlorophyllide reductase (DPOR) that uses Mg-ATP and reduced ferredoxin to reduce ring D of protochlorophyllide (Pchlide) to form chlorophyllide a (Chlide). This reaction is light-independent. The L component serves as a unique electron donor to the NB-component of the complex, and binds Mg-ATP. | 0.929 |
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