STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL41759.1L-alanine-DL-glutamate epimerase. (327 aa)    
Predicted Functional Partners:
SFM83270.1
Muconolactone delta-isomerase.
  
 
 0.961
SFL41740.1
Uncharacterized conserved protein, NAD-dependent epimerase/dehydratase family.
 
     0.945
SFL33048.1
Protocatechuate 3,4-dioxygenase, beta subunit.
  
 
 0.747
SFL32762.1
4-hydroxyproline epimerase; Belongs to the proline racemase family.
    
 0.737
SFL22960.1
Glyoxalase family protein.
     
 0.726
SFL32052.1
Glyoxalase family protein.
     
 0.725
SFL77972.1
Acyl transferase domain-containing protein.
    
 0.678
SFL67478.1
2-dehydro-3-deoxygalactonokinase.
  
 
 0.654
SFL33105.1
3-oxoadipate enol-lactonase / 4-carboxymuconolactone decarboxylase.
  
 
 0.618
SFL86104.1
Carboxymethylenebutenolidase.
   
 
 0.578
Your Current Organism:
Methylobacterium pseudosasicola
NCBI taxonomy Id: 582667
Other names: ICMP 17621, M. pseudosasicola, Methylobacterium pseudosasicola Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL36, NBRC 105203, strain BL36
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