STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM10210.1Cell filamentation protein. (216 aa)    
Predicted Functional Partners:
SFM10227.1
Hypothetical protein.
       0.779
SFM10934.1
Putative serine protein kinase, PrkA.
   
    0.649
SFL93394.1
Trehalose 6-phosphatase; Removes the phosphate from trehalose 6-phosphate to produce free trehalose.
   
    0.642
SFL24724.1
Nucleoid-associated protein YgaU, contains BON and LysM domains.
   
    0.640
SFL41024.1
Putative transcriptional regulator.
 
    0.499
dxs
1-deoxy-D-xylulose-5-phosphate synthase; Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (DXP); Belongs to the transketolase family. DXPS subfamily.
       0.486
SFM43824.1
Uncharacterized conserved protein PhnB, glyoxalase superfamily.
   
  
 0.486
SFL94121.1
2,5-diketo-D-gluconate reductase A.
   
    0.469
SFM10976.1
Stage V sporulation protein SpoVR/YcgB, involved in spore cortex formation.
   
    0.467
SFM60353.1
Aldo/keto reductase.
   
    0.429
Your Current Organism:
Methylobacterium pseudosasicola
NCBI taxonomy Id: 582667
Other names: ICMP 17621, M. pseudosasicola, Methylobacterium pseudosasicola Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL36, NBRC 105203, strain BL36
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