STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM23525.1TniQ protein. (613 aa)    
Predicted Functional Partners:
SFM23502.1
AAA domain-containing protein.
 
   
 0.950
SFM23462.1
Hypothetical protein.
 
     0.947
SFM23484.1
Putative transposase.
 
     0.947
SFM31116.1
TniB protein.
 
   
 0.788
SFM31130.1
Hypothetical protein.
 
     0.778
SFM88140.1
Hypothetical protein.
  
     0.407
SFL11127.1
Putative phosphonate metabolism protein.
  
     0.404
Your Current Organism:
Methylobacterium pseudosasicola
NCBI taxonomy Id: 582667
Other names: ICMP 17621, M. pseudosasicola, Methylobacterium pseudosasicola Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL36, NBRC 105203, strain BL36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.