STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM32312.1PAS domain S-box-containing protein. (1093 aa)    
Predicted Functional Partners:
SFM47712.1
PAS domain S-box-containing protein.
 
0.991
SFL96304.1
PAS domain S-box-containing protein.
 
 0.990
SFM57325.1
Hypothetical protein.
  
 0.989
SFL29804.1
PAS/PAC sensor hybrid histidine kinase.
 0.978
SFM86820.1
Putative two-component system response regulator.
   
 0.978
SFM86847.1
Hypothetical protein.
   
 0.978
SFL56430.1
PAS domain S-box-containing protein.
 0.971
SFL75632.1
PAS domain S-box-containing protein.
 
0.969
SFM63692.1
PAS domain S-box-containing protein.
 
 0.969
SFL15128.1
Signal transduction histidine kinase.
 
0.965
Your Current Organism:
Methylobacterium pseudosasicola
NCBI taxonomy Id: 582667
Other names: ICMP 17621, M. pseudosasicola, Methylobacterium pseudosasicola Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL36, NBRC 105203, strain BL36
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