STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM48884.1Hypothetical protein. (382 aa)    
Predicted Functional Partners:
SFM40125.1
DNA processing protein.
  
  
 0.577
SFM14427.1
Helix-hairpin-helix motif-containing protein.
   
  
 0.576
SFM19132.1
DNA uptake protein ComE.
   
  
 0.576
SFM99297.1
Transposase.
  
     0.556
SFN01715.1
Transposase.
  
     0.495
SFM88023.1
Transposase.
  
     0.494
SFM48862.1
DNA topoisomerase-3.
       0.488
SFM98743.1
Transposase.
  
     0.485
SFM88181.1
Transposase.
  
     0.484
SFM99309.1
Transposase.
  
     0.483
Your Current Organism:
Methylobacterium pseudosasicola
NCBI taxonomy Id: 582667
Other names: ICMP 17621, M. pseudosasicola, Methylobacterium pseudosasicola Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL36, NBRC 105203, strain BL36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.