STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFM64174.1Peptide/nickel transport system substrate-binding protein. (315 aa)    
Predicted Functional Partners:
SFM90012.1
Peptide/nickel transport system permease protein.
 
  0.832
SFM90037.1
Peptide/nickel transport system permease protein.
 
  0.771
SFM64153.1
Extracellular solute-binding protein, family 5 Middle.
 
     0.712
SFL81528.1
Peptide/nickel transport system permease protein.
 
  0.605
SFL81550.1
Peptide/nickel transport system permease protein.
 
  0.603
SFM90080.1
Peptide/nickel transport system permease protein.
 
  0.581
SFL33508.1
Peptide/nickel transport system permease protein.
 
  0.570
SFM64200.1
Selenocysteine-specific translation elongation factor SelB.
       0.558
SFM90057.1
Peptide/nickel transport system permease protein.
 
  0.555
SFL71745.1
Peptide/nickel transport system permease protein.
 
  0.549
Your Current Organism:
Methylobacterium pseudosasicola
NCBI taxonomy Id: 582667
Other names: ICMP 17621, M. pseudosasicola, Methylobacterium pseudosasicola Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL36, NBRC 105203, strain BL36
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.