STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDM78417.1Putative beta-barrel porin-2, OmpL-like. bbp2. (450 aa)    
Predicted Functional Partners:
SDN53373.1
Outer membrane receptor proteins, mostly Fe transport.
  
   
 0.736
SDM78474.1
AraC-type DNA-binding protein.
       0.671
SDN28780.1
YfdX protein.
  
     0.629
SDN15107.1
Hypothetical protein.
  
     0.620
SDN59946.1
Protein of unknown function.
  
     0.561
SDN76147.1
Hypothetical protein.
  
     0.542
SDN13827.1
Hypothetical protein.
  
     0.529
SDM46029.1
Hypothetical protein.
  
     0.519
SDN66155.1
Protein of unknown function.
  
     0.472
SDO42447.1
Hopanoid biosynthesis associated radical SAM protein HpnH.
  
     0.464
Your Current Organism:
Methylobacterium phyllostachyos
NCBI taxonomy Id: 582672
Other names: ICMP 17619, M. phyllostachyos, Methylobacterium phyllostachyos Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL47, NBRC 105206, strain BL47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.