STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDN30272.1Dihydroorotase. (379 aa)    
Predicted Functional Partners:
selA
L-seryl-tRNA(Sec) selenium transferase; Converts seryl-tRNA(Sec) to selenocysteinyl-tRNA(Sec) required for selenoprotein biosynthesis.
  
  
 0.760
SDN30426.1
Peptide/nickel transport system substrate-binding protein.
 
     0.586
SDN77090.1
Uncharacterized conserved protein YgbK, DUF1537 family.
  
     0.538
SDN30208.1
NitT/TauT family transport system permease protein.
       0.527
SDN30241.1
NitT/TauT family transport system ATP-binding protein.
       0.527
SDN30303.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.504
SDN30366.1
Peptide/nickel transport system permease protein.
       0.498
SDN30395.1
Peptide/nickel transport system permease protein.
       0.495
SDN30337.1
Peptide/nickel transport system ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.490
SDN17568.1
Carbohydrate ABC transporter substrate-binding protein, CUT1 family.
  
     0.436
Your Current Organism:
Methylobacterium phyllostachyos
NCBI taxonomy Id: 582672
Other names: ICMP 17619, M. phyllostachyos, Methylobacterium phyllostachyos Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL47, NBRC 105206, strain BL47
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