STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO16123.1TIGR02301 family protein. (150 aa)    
Predicted Functional Partners:
SDO16152.1
Hypothetical protein.
 
     0.831
SDO16052.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
       0.808
SDO16073.1
Hypothetical protein.
       0.808
SDO16098.1
ADP-ribose pyrophosphatase YjhB, NUDIX family; Belongs to the Nudix hydrolase family.
       0.808
SDN28181.1
Hypothetical protein.
  
     0.774
SDO24482.1
Hypothetical protein.
  
     0.773
SDM46910.1
Uncharacterized conserved protein, contains Zn-finger domain.
  
     0.772
SDM70574.1
Hypothetical protein.
  
     0.772
SDN97675.1
Hypothetical protein.
  
     0.772
SDN97708.1
Uncharacterized membrane protein.
  
     0.772
Your Current Organism:
Methylobacterium phyllostachyos
NCBI taxonomy Id: 582672
Other names: ICMP 17619, M. phyllostachyos, Methylobacterium phyllostachyos Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL47, NBRC 105206, strain BL47
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.