STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO23903.1comF family protein. (253 aa)    
Predicted Functional Partners:
SDM51577.1
DNA processing protein.
 
 
 0.962
SDM46974.1
DNA repair protein RadC; Belongs to the UPF0758 family.
 
    0.910
SDO49906.1
Cyclohexadieny/prephenate dehydrogenase.
   
  
 0.882
SDM85533.1
Protoporphyrinogen oxidase.
  
    0.871
SDN99131.1
Flagellar motility protein MotE, a chaperone for MotC folding.
   
    0.865
apt
Adenine phosphoribosyltransferase; Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis.
   
    0.863
SDN04158.1
Competence protein ComEC.
 
  
 0.859
SDM16200.1
Capsular polysaccharide transport system ATP-binding protein.
   
    0.858
SDM87092.1
Magnesium chelatase family protein.
 
  
 0.854
SDN41567.1
Flagellar motility protein MotE, a chaperone for MotC folding.
   
    0.836
Your Current Organism:
Methylobacterium phyllostachyos
NCBI taxonomy Id: 582672
Other names: ICMP 17619, M. phyllostachyos, Methylobacterium phyllostachyos Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL47, NBRC 105206, strain BL47
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