STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDO62961.1AraC-type DNA-binding protein. (324 aa)    
Predicted Functional Partners:
SDN65931.1
AraC-type DNA-binding protein.
  
     0.770
SDO66395.1
AraC-type DNA-binding protein.
  
     0.751
ribB
3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; Belongs to the DHBP synthase family.
    
 0.737
SDM70497.1
Glutamate synthase (NADPH/NADH) large chain.
    
  0.733
SDM50791.1
Malate dehydrogenase (oxaloacetate-decarboxylating)(NADP+).
     
 0.732
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.701
SDO58290.1
Urea carboxylase precursor.
  
 
  0.554
SDM53919.1
PAS domain S-box-containing protein.
     
 0.457
SDO24369.1
HD domain-containing protein.
  
  
  0.433
SDM43017.1
acetyl-CoA C-acetyltransferase; Belongs to the thiolase-like superfamily. Thiolase family.
  
  
 0.422
Your Current Organism:
Methylobacterium phyllostachyos
NCBI taxonomy Id: 582672
Other names: ICMP 17619, M. phyllostachyos, Methylobacterium phyllostachyos Madhaiyan and Poonguzhali 2014, Methylobacterium sp. BL47, NBRC 105206, strain BL47
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