STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srpRHTH-type transcriptional regulator SrpR. (219 aa)    
Predicted Functional Partners:
oppA_1
Oligopeptide-binding protein OppA precursor.
 
     0.842
dppC_2
Dipeptide transport system permease protein DppC.
 
     0.674
dppB_4
Dipeptide transport system permease protein DppB.
 
     0.657
oppD_4
Oligopeptide transport ATP-binding protein OppD.
 
     0.611
oppF_3
Oligopeptide transport ATP-binding protein OppF.
 
     0.587
yxeP_2
Putative hydrolase YxeP.
       0.566
bglX_3
Periplasmic beta-glucosidase precursor.
 
     0.472
Your Current Organism:
Microbacterium azadirachtae
NCBI taxonomy Id: 582680
Other names: DSM 23848, JCM 15681, KCTC 19668, LMG 24772, LMG:24772, M. azadirachtae, Microbacterium azadirachtae Madhaiyan et al. 2010, Microbacterium sp. AI-S262, strain AI-S262
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.