STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SCY56870.1Hypothetical protein. (244 aa)    
Predicted Functional Partners:
SCY56919.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.953
SCY56939.1
Signal transduction histidine kinase.
 
  
  0.944
SCY56896.1
Hypothetical protein.
 
  
 
0.932
SCY58482.1
Hypothetical protein.
 
  
 
0.928
SCY56959.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  
  0.872
SCY58445.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.766
SCY58412.1
Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase.
 
     0.559
SCZ08676.1
ABC-2 type transport system ATP-binding protein.
 
 
 0.528
SCY39612.1
Predicted DNA-binding transcriptional regulator YafY, contains an HTH and WYL domains.
  
     0.479
SCZ14000.1
Transcriptional regulator, ArsR family.
       0.468
Your Current Organism:
Paenibacillus polysaccharolyticus
NCBI taxonomy Id: 582692
Other names: ICMP 17623, NBRC 105191, P. polysaccharolyticus, Paenibacillus polysaccharolyticus Madhaiyan et al. 2017, Paenibacillus sp. BL9, strain BL9
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