STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK38150.1Type II secretion system protein K (GspK). (289 aa)    
Predicted Functional Partners:
SFK38178.1
Type II secretion system protein J (GspJ).
 
 
 0.994
SFK38200.1
General secretion pathway protein I.
 
 
 0.986
SFK38043.1
Type II secretion system protein D (GspD).
 
   
 0.962
SFK38124.1
General secretion pathway protein L.
 
   
 0.951
GspH
Type II secretion system protein H (GspH).
 
     0.950
SFK38095.1
General secretion pathway protein M.
 
   
 0.943
gspG
Type II secretion system protein G (GspG).
 
 
 0.935
SFK38068.1
General secretion pathway protein N.
     
 0.788
SFL16073.1
Type IV fimbrial biogenesis protein FimT.
  
 
 0.754
gspE
Type II secretion system protein E (GspE); Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins.
 
  
 0.636
Your Current Organism:
Rhodanobacter glycinis
NCBI taxonomy Id: 582702
Other names: ICMP 17626, NBRC 105007, R. glycinis, Rhodanobacter glycinis Madhaiyan et al. 2014, Rhodanobacter sp. MO64, strain MO64
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.