Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Gnd | SFK46772.1 | SAMN05192579_104257 | SAMN05192579_10378 | 6-phosphogluconate dehydrogenase (decarboxylating). | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 0.907 |
Gnd | SFL14290.1 | SAMN05192579_104257 | SAMN05192579_11634 | 6-phosphogluconate dehydrogenase (decarboxylating). | Gluconate kinase, SKI family. | 0.931 |
Gnd | rpiA | SAMN05192579_104257 | SAMN05192579_103118 | 6-phosphogluconate dehydrogenase (decarboxylating). | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.926 |
SFK30114.1 | SFL07418.1 | SAMN05192579_101454 | SAMN05192579_11362 | Phosphoglucomutase. | Phosphomannomutase. | 0.940 |
SFK30114.1 | prs | SAMN05192579_101454 | SAMN05192579_11969 | Phosphoglucomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.910 |
SFK30114.1 | rbsK | SAMN05192579_101454 | SAMN05192579_12424 | Phosphoglucomutase. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.911 |
SFK30114.1 | rpiA | SAMN05192579_101454 | SAMN05192579_103118 | Phosphoglucomutase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.925 |
SFK30114.1 | tkt | SAMN05192579_101454 | SAMN05192579_101453 | Phosphoglucomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.970 |
SFK30114.1 | tkt-2 | SAMN05192579_101454 | SAMN05192579_10371 | Phosphoglucomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.928 |
SFK46772.1 | Gnd | SAMN05192579_10378 | SAMN05192579_104257 | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | 6-phosphogluconate dehydrogenase (decarboxylating). | 0.907 |
SFK46772.1 | prs | SAMN05192579_10378 | SAMN05192579_11969 | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.583 |
SFK46772.1 | rpiA | SAMN05192579_10378 | SAMN05192579_103118 | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.949 |
SFK46772.1 | tkt | SAMN05192579_10378 | SAMN05192579_101453 | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.961 |
SFK46772.1 | tkt-2 | SAMN05192579_10378 | SAMN05192579_10371 | Ribulose-5-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.965 |
SFK47669.1 | rpiA | SAMN05192579_103119 | SAMN05192579_103118 | Predicted RNA-binding protein, contains PUA-like domain. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.696 |
SFL07418.1 | SFK30114.1 | SAMN05192579_11362 | SAMN05192579_101454 | Phosphomannomutase. | Phosphoglucomutase. | 0.940 |
SFL07418.1 | prs | SAMN05192579_11362 | SAMN05192579_11969 | Phosphomannomutase. | Ribose-phosphate pyrophosphokinase; Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib- 5-P); Belongs to the ribose-phosphate pyrophosphokinase family. Class I subfamily. | 0.924 |
SFL07418.1 | rbsK | SAMN05192579_11362 | SAMN05192579_12424 | Phosphomannomutase. | Ribokinase; Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5-phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway. | 0.904 |
SFL07418.1 | rpiA | SAMN05192579_11362 | SAMN05192579_103118 | Phosphomannomutase. | Ribose-5-phosphate isomerase; Catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate. | 0.911 |
SFL07418.1 | tkt | SAMN05192579_11362 | SAMN05192579_101453 | Phosphomannomutase. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.915 |
page 1 of 3