STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK84280.1RNA polymerase sigma-70 factor, ECF subfamily. (159 aa)    
Predicted Functional Partners:
SFK84310.1
FecR family protein.
 
 
 0.947
SFK84335.1
Outer-membrane receptor for ferric coprogen and ferric-rhodotorulic acid.
 
    0.777
SFK66481.1
FecR family protein.
 
 
 0.773
SFL18734.1
FecR family protein.
 
 
 0.769
SFL11748.1
sigma-E factor negative regulatory protein RseA.
  
 
 0.714
SFK66453.1
RNA polymerase sigma-70 factor, ECF subfamily.
  
     0.663
SFL24285.1
Iron complex outermembrane recepter protein.
  
    0.582
SFK89177.1
Transmembrane transcriptional regulator (anti-sigma factor RsiW).
  
 
 0.569
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.546
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.529
Your Current Organism:
Rhodanobacter glycinis
NCBI taxonomy Id: 582702
Other names: ICMP 17626, NBRC 105007, R. glycinis, Rhodanobacter glycinis Madhaiyan et al. 2014, Rhodanobacter sp. MO64, strain MO64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.