STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFK87477.1L-arabinonolactonase. (304 aa)    
Predicted Functional Partners:
SFK87557.1
2-keto-3-deoxygalactonate kinase.
 
     0.927
SFK87500.1
NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family.
    0.912
SFK87535.1
2-keto-3-deoxy-phosphogalactonate aldolase.
 
   
 0.881
SFK87516.1
Galactonate dehydratase.
 
   
 0.865
SFK87578.1
DNA-binding transcriptional regulator, FadR family.
 
   
 0.828
SFK87461.1
MFS transporter, SP family, galactose:H+ symporter.
 
     0.581
SFK87443.1
Beta-xylosidase, GH43 family.
       0.492
DgoD
Galactonate dehydratase.
 
   
 0.427
rplQ
LSU ribosomal protein L17P.
 
      0.419
SFK87358.1
Aldose 1-epimerase.
 
   
 0.407
Your Current Organism:
Rhodanobacter glycinis
NCBI taxonomy Id: 582702
Other names: ICMP 17626, NBRC 105007, R. glycinis, Rhodanobacter glycinis Madhaiyan et al. 2014, Rhodanobacter sp. MO64, strain MO64
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