STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFL06808.1Uncharacterized membrane protein YccC. (713 aa)    
Predicted Functional Partners:
SFK61716.1
Protein of unknown function.
 
   
 0.803
SFK61686.1
Multidrug resistance efflux pump.
 
  
 0.783
SFK37733.1
Pilin (type 1 fimbria component protein).
  
     0.614
SFK20580.1
Cytochrome c, mono-and diheme variants.
  
     0.574
SFK39158.1
Virulence protein (VirJ).
  
     0.518
SFK49311.1
Short-chain fatty acids transporter.
  
     0.516
SFK37706.1
Outer membrane usher protein.
  
     0.512
SFL04597.1
Cytochrome c biogenesis protein CcdA.
  
     0.510
SFK37682.1
Chaperone protein EcpD.
  
     0.479
SFK21485.1
Iron complex outermembrane recepter protein.
  
     0.474
Your Current Organism:
Rhodanobacter glycinis
NCBI taxonomy Id: 582702
Other names: ICMP 17626, NBRC 105007, R. glycinis, Rhodanobacter glycinis Madhaiyan et al. 2014, Rhodanobacter sp. MO64, strain MO64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.