STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TssKType VI secretion system protein ImpJ. (447 aa)    
Predicted Functional Partners:
SFL26051.1
Type VI secretion system protein ImpK.
 
  
 0.969
TssF
Type VI secretion system protein ImpG.
 
 
 0.961
TssB
Type VI secretion system protein ImpB.
 
  
 0.946
TssJ
Type VI secretion system protein VasD.
 
  
 0.937
TssE
Type VI secretion system protein ImpF.
 
  
 0.889
TssC
Type VI secretion system protein ImpC.
 
  
 0.884
TssG
Type VI secretion system protein ImpH.
 
  
 0.869
TssA
Type VI secretion system protein ImpA.
 
  
 0.867
TssM
Type VI secretion system protein ImpL.
 
  
 0.862
SFL26211.1
Type VI secretion system secreted protein Hcp.
 
  
 0.852
Your Current Organism:
Rhodanobacter glycinis
NCBI taxonomy Id: 582702
Other names: ICMP 17626, NBRC 105007, R. glycinis, Rhodanobacter glycinis Madhaiyan et al. 2014, Rhodanobacter sp. MO64, strain MO64
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.