Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
ACT50052.1TIGRFAM: TonB-dependent siderophore receptor; PFAM: TonB-dependent receptor; TonB-dependent receptor plug; Secretin/TonB short domain; KEGG: xcb:XC_0558 ferric pseudobactin M114 receptor protein. (849 aa)    
Predicted Functional Partners:
ACT50053.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1102 putative transmembrane sensor.
 
 
 0.867
ACT50050.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1078 putative transmembrane sensor.
 
   0.838
ACT50045.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1218 putative FecR protein.
 
 
 0.810
ACT50051.1
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; Sigma-70 region 4 type 2; KEGG: dac:Daci_5893 ECF subfamily RNA polymerase sigma-24 factor.
 
    0.789
ACT49664.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE0534 putative transmembrane sensor.
  
 
 0.785
ACT50825.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mms:mma_1234 Fe2+-dicitrate sensor, membrane component.
  
 
 0.772
ACT49668.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: neu:NE1095 putative transmembrane sensor.
  
 
 0.771
ACT51990.1
PFAM: FecR protein; KEGG: avn:Avin_17700 anti-sigma factor, FecR family.
  
 
 0.765
ACT51413.1
anti-FecI sigma factor, FecR; PFAM: FecR protein; KEGG: mfa:Mfla_1352 putative FecR.
  
 
 0.747
ACT49671.1
PFAM: PepSY-associated TM helix domain protein; KEGG: mms:mma_2644 hypothetical protein.
 
    0.741
Your Current Organism:
Methylovorus glucosetrophus
NCBI taxonomy Id: 582744
Other names: M. glucosetrophus SIP3-4, Methylovorus glucosetrophus SIP3-4, Methylovorus glucosetrophus str. SIP3-4, Methylovorus glucosetrophus strain SIP3-4, Methylovorus sp. SIP3-4
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