Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ACT50908.1KEGG: rpi:Rpic_2346 hypothetical protein. (176 aa)    
Predicted Functional Partners:
ACT50907.1
KEGG: psb:Psyr_2821 hypothetical protein.
  
    0.637
ACT50909.1
PFAM: DNA methylase N-4/N-6 domain protein; KEGG: aav:Aave_1746 DNA methylase N-4/N-6 domain-containing protein.
       0.470
ACT50910.1
PFAM: C-5 cytosine-specific DNA methylase; KEGG: ppg:PputGB1_3461 C-5 cytosine-specific DNA methylase.
       0.470
ACT50911.1
Hypothetical protein.
       0.470
ACT50912.1
PFAM: protein of unknown function DUF1643; KEGG: smd:Smed_1928 hypothetical protein.
       0.470
ACT50913.1
PFAM: heat shock protein DnaJ domain protein; KEGG: bxe:Bxe_A3108 DnaJ-class molecular chaperone.
       0.470
ACT50914.1
Hypothetical protein.
       0.470
ACT50915.1
KEGG: bgl:bglu_1g20800 hypothetical protein.
       0.470
ACT50916.1
Hypothetical protein.
       0.470
Your Current Organism:
Methylovorus glucosetrophus
NCBI taxonomy Id: 582744
Other names: M. glucosetrophus SIP3-4, Methylovorus glucosetrophus SIP3-4, Methylovorus glucosetrophus str. SIP3-4, Methylovorus glucosetrophus strain SIP3-4, Methylovorus sp. SIP3-4
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