Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
OSO01_22940 | OSO01_24150 | GCA_900162665_00719 | GCA_900162665_01084 | Unannotated protein. | Unannotated protein. | 0.498 |
OSO01_22940 | OSO01_40260 | GCA_900162665_00719 | GCA_900162665_03644 | Unannotated protein. | Unannotated protein. | 0.819 |
OSO01_22940 | trpA | GCA_900162665_00719 | GCA_900162665_03896 | Unannotated protein. | Unannotated protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.678 |
OSO01_22940 | trpB | GCA_900162665_00719 | GCA_900162665_03895 | Unannotated protein. | Unannotated protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.659 |
OSO01_24150 | OSO01_22940 | GCA_900162665_01084 | GCA_900162665_00719 | Unannotated protein. | Unannotated protein. | 0.498 |
OSO01_24150 | OSO01_40260 | GCA_900162665_01084 | GCA_900162665_03644 | Unannotated protein. | Unannotated protein. | 0.529 |
OSO01_24150 | aroA_3 | GCA_900162665_01084 | GCA_900162665_00114 | Unannotated protein. | Unannotated protein. | 0.491 |
OSO01_24150 | aroE | GCA_900162665_01084 | GCA_900162665_00481 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.488 |
OSO01_24150 | kynU | GCA_900162665_01084 | GCA_900162665_03356 | Unannotated protein. | Unannotated protein; Catalyzes the cleavage of L-kynurenine (L-Kyn) and L-3- hydroxykynurenine (L-3OHKyn) into anthranilic acid (AA) and 3- hydroxyanthranilic acid (3-OHAA), respectively. | 0.503 |
OSO01_24150 | pdxS | GCA_900162665_01084 | GCA_900162665_01085 | Unannotated protein. | Unannotated protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.606 |
OSO01_24150 | pdxT | GCA_900162665_01084 | GCA_900162665_01086 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS. | 0.519 |
OSO01_24150 | trpA | GCA_900162665_01084 | GCA_900162665_03896 | Unannotated protein. | Unannotated protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.529 |
OSO01_24150 | trpB | GCA_900162665_01084 | GCA_900162665_03895 | Unannotated protein. | Unannotated protein; The beta subunit is responsible for the synthesis of L- tryptophan from indole and L-serine. | 0.529 |
OSO01_24150 | tyrA | GCA_900162665_01084 | GCA_900162665_02333 | Unannotated protein. | Unannotated protein. | 0.491 |
OSO01_40260 | OSO01_22940 | GCA_900162665_03644 | GCA_900162665_00719 | Unannotated protein. | Unannotated protein. | 0.819 |
OSO01_40260 | OSO01_24150 | GCA_900162665_03644 | GCA_900162665_01084 | Unannotated protein. | Unannotated protein. | 0.529 |
OSO01_40260 | aroA_3 | GCA_900162665_03644 | GCA_900162665_00114 | Unannotated protein. | Unannotated protein. | 0.947 |
OSO01_40260 | aroE | GCA_900162665_03644 | GCA_900162665_00481 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA). | 0.894 |
OSO01_40260 | pdxS | GCA_900162665_03644 | GCA_900162665_01085 | Unannotated protein. | Unannotated protein; Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5- phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively. Belongs to the PdxS/SNZ family. | 0.405 |
OSO01_40260 | trpA | GCA_900162665_03644 | GCA_900162665_03896 | Unannotated protein. | Unannotated protein; The alpha subunit is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. Belongs to the TrpA family. | 0.954 |
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