STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ispEUnannotated protein; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. (283 aa)    
Predicted Functional Partners:
rsmA
Unannotated protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
 0.882
purR
Unannotated protein.
  
    0.664
trmD
Unannotated protein; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
  
 
 0.642
rnmV
Unannotated protein; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
  
  
 0.569
secG
Unannotated protein; Involved in protein export. Participates in an early event of protein translocation; Belongs to the SecG family.
 
    0.493
sspF
Unannotated protein.
       0.476
ypfD
Unannotated protein.
 
  
 0.462
yocH
Unannotated protein.
     
 0.452
OSO01_21700
Unannotated protein; Belongs to the FPP/GGPP synthase family.
 
   
 0.435
yacP
Unannotated protein.
  
     0.431
Your Current Organism:
Oceanobacillus sojae
NCBI taxonomy Id: 582851
Other names: CIP 109918, JCM 15792, NRRL B-59181, O. sojae, Oceanobacillus soja, Oceanobacillus sojae corrig. Tominaga et al. 2009, Oceanobacillus sp. Y27, strain Y27
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.