node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Hden_0400 | Hden_2325 | Hden_0400 | Hden_2325 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 0.794 |
Hden_0400 | Hden_3128 | Hden_0400 | Hden_3128 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; KEGG: met:M446_6547 ATP-dependent helicase HrpB; SMART: helicase-associated domain protein; helicase domain protein; DEAD-like helicase. | 0.734 |
Hden_0400 | rnr | Hden_0400 | Hden_0630 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.830 |
Hden_0400 | rph | Hden_0400 | Hden_3387 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.910 |
Hden_0400 | rplD | Hden_0400 | Hden_1018 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.717 |
Hden_0400 | rpsD | Hden_0400 | Hden_2118 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.824 |
Hden_0400 | rpsK | Hden_0400 | Hden_1040 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.811 |
Hden_0400 | rpsM | Hden_0400 | Hden_1039 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.720 |
Hden_0400 | rpsO | Hden_0400 | Hden_3501 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.699 |
Hden_0400 | rpsQ | Hden_0400 | Hden_1026 | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.704 |
Hden_2325 | Hden_0400 | Hden_2325 | Hden_0400 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | KEGG: pla:Plav_0196 3'-5' exonuclease; PFAM: 3'-5' exonuclease; SMART: 3'-5' exonuclease. | 0.794 |
Hden_2325 | Hden_3128 | Hden_2325 | Hden_3128 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | TIGRFAM: ATP-dependent helicase HrpB; PFAM: Helicase ATP-dependent domain protein; helicase domain protein; helicase-associated domain protein; KEGG: met:M446_6547 ATP-dependent helicase HrpB; SMART: helicase-associated domain protein; helicase domain protein; DEAD-like helicase. | 0.921 |
Hden_2325 | rnr | Hden_2325 | Hden_0630 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribonuclease R; 3'-5' exoribonuclease that releases 5'-nucleoside monophosphates and is involved in maturation of structured RNAs. | 0.501 |
Hden_2325 | rph | Hden_2325 | Hden_3387 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribonuclease PH; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation. | 0.777 |
Hden_2325 | rplD | Hden_2325 | Hden_1018 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribosomal protein L4/L1e; Forms part of the polypeptide exit tunnel. | 0.991 |
Hden_2325 | rpsD | Hden_2325 | Hden_2118 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit. | 0.997 |
Hden_2325 | rpsK | Hden_2325 | Hden_1040 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S11; Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine- Dalgarno cleft in the 70S ribosome; Belongs to the universal ribosomal protein uS11 family. | 0.996 |
Hden_2325 | rpsM | Hden_2325 | Hden_1039 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S13; Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits; these bridges are implicated in subunit movement. Contacts the tRNAs in the A and P-sites. Belongs to the universal ribosomal protein uS13 family. | 0.975 |
Hden_2325 | rpsO | Hden_2325 | Hden_3501 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | Ribosomal protein S15; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.947 |
Hden_2325 | rpsQ | Hden_2325 | Hden_1026 | Ribosomal protein S1; Binds mRNA; thus facilitating recognition of the initiation point. It is needed to translate mRNA with a short Shine-Dalgarno (SD) purine-rich sequence. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.980 |