STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_0427KEGG: nar:Saro_0765 hypothetical protein. (245 aa)    
Predicted Functional Partners:
Hden_0426
KEGG: nar:Saro_0764 hypothetical protein.
 
 
 0.995
Hden_2206
TIGRFAM: TonB family protein; KEGG: rce:RC1_1801 protein TonB, putative.
  
     0.751
Hden_3156
KEGG: bja:bll4177 hypothetical protein.
  
     0.727
Hden_0425
KEGG: gau:GAU_2472 hypothetical protein.
       0.719
Hden_0452
KEGG: nhl:Nhal_1316 hypothetical protein.
  
     0.694
Hden_0428
KEGG: nar:Saro_0770 hypothetical protein.
       0.613
Hden_2230
KEGG: dsa:Desal_2391 hypothetical protein.
  
     0.603
Hden_2677
KEGG: oca:OCAR_4436 hypothetical protein.
  
    0.596
Hden_0761
KEGG: oca:OCAR_4436 hypothetical protein.
  
    0.594
Hden_1838
KEGG: rpa:RPA1995 hypothetical protein.
  
     0.547
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.