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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_1237PFAM: Protein of unknown function DUF2313, Mu protein gp48; KEGG: bbt:BBta_6582 hypothetical protein. (243 aa)    
Predicted Functional Partners:
Hden_1236
PFAM: Baseplate J family protein; KEGG: bbt:BBta_6583 putative bacteriophage protein.
  
    0.811
Hden_1235
PFAM: GP46 family protein; KEGG: bbt:BBta_6584 putative bacteriophage protein, GP46-like protein.
  
    0.794
Hden_1231
PFAM: DNA circulation family protein; KEGG: bbt:BBta_6587 putative Mu-like prophage DNA circulation protein.
  
    0.786
Hden_1230
KEGG: oan:Oant_0888 TP901 family phage tail tape measure protein; TIGRFAM: phage tail tape measure protein, TP901 family; PFAM: tail tape measure protein TP901 core region.
     
 0.785
Hden_1232
PFAM: Mu P family protein; KEGG: bbt:BBta_6586 putative Mu-like prophage tail protein.
  
    0.784
Hden_1238
KEGG: bbt:BBta_6581 hypothetical protein.
       0.773
Hden_1239
KEGG: azl:AZL_025360 hypothetical protein.
       0.773
Hden_1240
KEGG: tps:THAPSDRAFT_10744 hypothetical protein.
       0.773
Hden_1234
Manually curated; KEGG: oan:Oant_2301 PaaR repeat-containing protein.
     
 0.750
Hden_1233
KEGG: mno:Mnod_2446 Mu-like prophage protein GP45-like protein.
       0.746
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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