STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_2023PFAM: protein of unknown function DUF344; KEGG: gur:Gura_2647 hypothetical protein. (275 aa)    
Predicted Functional Partners:
ppa
Inorganic diphosphatase; Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions.
    
 0.907
Hden_0482
TIGRFAM: hopanoid biosynthesis associated radical SAM protein HpnJ; PFAM: Radical SAM domain protein; KEGG: met:M446_6339 hopanoid biosynthesis associated radical SAM protein HpnJ; SMART: Elongator protein 3/MiaB/NifB.
   
    0.529
Hden_2046
KEGG: pla:Plav_1528 cytochrome c oxidase cbb3 type accessory protein FixG; TIGRFAM: cytochrome c oxidase accessory protein CcoG; PFAM: 4Fe-4S ferredoxin iron-sulfur binding domain protein.
   
    0.515
Hden_2024
Calcium/proton antiporter, CaCA family; Ca(+)/H(+) antiporter that extrudes calcium in exchange for external protons.
       0.477
Hden_2025
Manually curated; TIGRFAM: sulfate transporter; KEGG: bja:blr2848 sulphate transport protein; PFAM: sulphate transporter; Sulfate transporter/antisigma-factor antagonist STAS.
       0.472
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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