STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_2355KEGG: nha:Nham_2326 FeS assembly protein SufD; TIGRFAM: FeS assembly protein SufD; PFAM: SufBD protein. (444 aa)    
Predicted Functional Partners:
Hden_2356
TIGRFAM: FeS assembly ATPase SufC; PFAM: ABC transporter related; KEGG: pde:Pden_3966 FeS assembly ATPase SufC; SMART: AAA ATPase.
 
 
 0.999
Hden_2358
FeS assembly protein SufB; KEGG: atc:AGR_C_3348 ABC transporter membrane protein XF1476; TIGRFAM: FeS assembly protein SufB; PFAM: SufBD protein.
 
 
0.995
Hden_2354
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
 
 
 0.984
Hden_2353
KEGG: mpo:Mpop_4461 FeS assembly SUF system protein; TIGRFAM: FeS assembly SUF system protein; PFAM: protein of unknown function DUF59.
 
   
 0.950
Hden_0759
KEGG: bxe:Bxe_B1552 cysteine desulphurases, SufS; TIGRFAM: cysteine desulfurase, SufS subfamily; PFAM: aminotransferase class V; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family.
 
 
 0.910
Hden_1785
KEGG: mrd:Mrad2831_4640 NifU domain-containing protein.
 
  
 0.848
Hden_2352
KEGG: azc:AZC_3609 HesB protein; TIGRFAM: iron-sulfur cluster assembly accessory protein; PFAM: HesB/YadR/YfhF-family protein; Belongs to the HesB/IscA family.
  
 
 0.846
Hden_1096
PFAM: Fe-S metabolism associated SufE; KEGG: bbt:BBta_3043 putative SufE-like protein.
 
 
 0.762
Hden_2359
TIGRFAM: transcriptional regulator, Rrf2 family; KEGG: rce:RC1_1616 cysteine desulfurase; PFAM: aminotransferase class V; protein of unknown function UPF0074.
  
  
 0.646
Hden_2357
KEGG: gdj:Gdia_0591 hypothetical protein.
       0.615
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.