STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Hden_2448PFAM: ErfK/YbiS/YcfS/YnhG family protein; Peptidoglycan-binding domain 1 protein; KEGG: azc:AZC_0439 hypothetical protein. (743 aa)    
Predicted Functional Partners:
Hden_2638
PFAM: protein of unknown function DUF882; KEGG: mlo:mll2999 hypothetical protein.
 
     0.756
Hden_0422
PFAM: peptidase U6 penicillin-insensitive murein endopeptidase; KEGG: rpe:RPE_0091 penicillin-insensitive murein endopeptidase.
  
     0.529
Hden_2449
PFAM: thiamine monophosphate synthase; KEGG: hne:HNE_3185 thiamine-phosphate pyrophosphorylase.
       0.415
Hden_2450
KEGG: oca:OCAR_7315 Sel1; PFAM: Sel1 domain protein repeat-containing protein; SMART: Sel1 domain protein repeat-containing protein.
       0.415
Hden_3178
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: met:M446_5308 hypothetical protein.
  
   
 0.414
Hden_2669
PFAM: ErfK/YbiS/YcfS/YnhG family protein; KEGG: xau:Xaut_3215 ErfK/YbiS/YcfS/YnhG family protein.
 
  
 0.404
Your Current Organism:
Hyphomicrobium denitrificans ATCC 51888
NCBI taxonomy Id: 582899
Other names: H. denitrificans ATCC 51888, Hyphomicrobium denitrificans str. ATCC 51888, Hyphomicrobium denitrificans strain ATCC 51888
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.